Biswajit Banerjee

Unit testing with MPI, googletest, and cmake

Continuous integration with make

Introduction

In this article we take a short detour into the problem of continuous unit testing of code that contains MPI calls and use either mpich or Open MPI. I have recently moved from CTest-based testing to a combination of CMake and googletest. The reason for the shift is the convenience googletest provides. However, the googletest primer and advanced manual do not contain many examples and can be cryptic at times. I hope this article will provide pointers to those who run into a roadblock when testing MPI applications with googletest.

Installing googletest

I typically install googletest as a submodule in my git repository. For example,

git submodule add git@github.com:google/googletest.git ./googletest

There are several caveats when using git submodules. For our purposes, we only have to remember that when we clone the repository we have to use

git clone --recursive

Other tips can be found in a nicely condensed form in Sentheon’s blog.

Making sure cmake finds and compiles googletest

To make sure that googletest can be found and is built during the compile process, I add the following to by root CMakeLists.txt file:

if (USE_CLANG)
  set(CMAKE_CXX_COMPILER "/usr/local/bin/clang++")
endif ()
set(gtest_force_shared_crt ON CACHE BOOL "" FORCE)
add_subdirectory(googletest)

The first line is needed because I have not been successful in passing the clang compiler name to googletest without specifying the full path. I’m sure one can use a more general approach, but I haven’t felt the need to spend the time trying to figure out a better way. The add_subdirectory command is all that is needed for cmake to compile googletest and produce static libraries.

Adding local unit tests

Next I add a UnitTests directory in my directory of interest and modify the local CMakeLists.txt to be able to find the UnitTests directory. For example,

SET(SPH_SRCS
  ${CMAKE_CURRENT_SOURCE_DIR}/SmoothParticleHydro.cpp
)
SET(ELLIP3D_SRCS
  ${ELLIP3D_SRCS}
  ${SPH_SRCS}
  PARENT_SCOPE
)
add_subdirectory(UnitTests)

In this case I am going to test my Smoothed Particle Hydrodynamics code.

The CMakeLists.txt file in UnitTests

Now we are finally really to add our unit tests to the build chain. The CMakeLists.txt file in the UnitTests directory has two sections (which can be simplified if you are so inclined).

In the first section, we find the location of the googletest headers and libraries:

set(GTEST_INCLUDE_DIR "${CMAKE_SOURCE_DIR}/googletest/googletest/include")
set(GTEST_LIB gtest_main gtest)
include_directories(${GTEST_INCLUDE_DIR})

Note that the two googletest libraries that we use are gtest_main and gtest.

In the second section, we add the actual test that requires MPI. Once again, these details can be abstracted into a cmake function if you so desire.

add_executable(testSPHParticleScatter testSPHParticleScatter.cpp)
target_link_libraries(testSPHParticleScatter
  ${GTEST_LIB}
  ellip3D_lib
  ${MPI_LIBRARY}
  ....
)
set(UNIT_TEST testSPHParticleScatter)
set(MPI_COMMAND mpirun -np 2 ${UNIT_TEST})
add_custom_command(
  TARGET ${UNIT_TEST}
  POST_BUILD
  COMMAND ${MPI_COMMAND}

The add_executable line identifies the unit test program testSPHParticleScatter.cpp which tests the scatter operation between two MPI processes.

The target_link_libraries lists the libraries that are needed: the googletest libraries (GTEST_LIB) and our coupled DEM-SPH code library (ellip3D_lib)

Then we set up a command to run (MPI_COMMAND) and make it use mpirun. You can generalize this if you want.

Finally we, add the add_custom_command line that tells cmake to run the MPI_COMMAND after the build is complete (POST_BUILD).

The actual test C++ code

Now that the build system has been configured, we just write our unit test testSPHParticleScatter.cpp.

First, we include the required headers:

#include <SmoothParticleHydro/SmoothParticleHydro.h>
#include <gtest/gtest.h>
#include <boost/mpi.hpp>

Note that we are using the Boost MPI wrappers.

The MPI test environment class

But we cannot use the boost::mpi::environment call to set up MPI (because the environment object is deleted before googletests are run). Instead, we have to set up a custom environment to run our MPI tests by creating a MPIEnvironment class that extends the ::testing::Environment class provided by googletest.

class MPIEnvironment : public ::testing::Environment
{
public:
  virtual void SetUp() {
    char** argv;
    int argc = 0;
    int mpiError = MPI_Init(&argc, &argv);
    ASSERT_FALSE(mpiError);
  }
  virtual void TearDown() {
    int mpiError = MPI_Finalize();
    ASSERT_FALSE(mpiError);
  }
  virtual ~MPIEnvironment() {}
};

Here, the SetUp function calls MPI_Init and sets up the environment while the TearDown function calls ‘MPI_Finalize`. All tests are performed when the environment is active.

The main test function

The main function in typically not needed in standard googletest tests and is generate by some internal magic. However, we do need a main function in testSPHParticleScatter.cpp because we are using mpirun to run the test.

int main(int argc, char* argv[])
{
  ::testing::InitGoogleTest(&argc, argv);
  ::testing::AddGlobalTestEnvironment(new MPIEnvironment);
  return RUN_ALL_TESTS();
}

The MPI specific environment is created by the AddGlobalTestEnvironment function to which we pass a MPIEnvironment object. The object is deleted internally by googletest.

The tests in testSPHParticleScatter.cpp are then run using RUN_ALL_TESTS(). Note that this function returns from main and, therefore, and non-googletest environment objects created in main (e.g., with boost::mpi::environment) are deleted before the tests are run.

The actual test

Finally, we add an actual test to testSPHParticleScatter.cpp as follows:

TEST(SPHParticleScatterTest, scatter)
{
  // Set up communicator
  boost::mpi::communicator boostWorld;
  // Set up SPH object
  SmoothParticleHydro sph;
  sph.setCommunicator(boostWorld);
  // ... Some code to create particles
  // ....
  sph.setParticles(particles);
  sph.scatterSPHParticle(domain, ghostWidth, domainBuffer);
  if (boostWorld.rank() == 0) {
    EXPECT_EQ(sph.getSPHParticleVec().size(), 100);
  } else {
    EXPECT_EQ(sph.getSPHParticleVec().size(), 200);
  }
}

The test can be written in the standard way and numerous examples can be found on the web. Of course, we have to be careful about keeping in mind that the test will be run on two processes in this particular case.

Caveat

The Boost MPI environment created by boost::mpi::environment allows MPI calls to fail without throwing an exception. For example, in my Patch code discussed in an earlier article, I have

MPI_Cart_rank(cartComm, neighborCoords.data(), &neighborRank);

I deliberately send invalid neighborCoords to this function to find out if a patch is a boundary patch. This does not create a problem when I use the boost::mpi::environment set up. But when setting up the environment explicitly for the unit tests, I have to add

MPI_Errhandler_set(cartComm, MPI_ERRORS_RETURN);

before I call MPI_Cart_rank to make sure I don’t get errors when I use invalid values of neighborCoords.

The output from make

Now, if we run make (after setting up the makefiles with cmake, of course), we not only compile the code but also run the unit test! In this particular case, here’s what the output looks like:

[ 69%] Built target ellip3D_lib
[ 71%] Built target paraEllip3D
[ 74%] Built target gtest
[ 76%] Built target gtest_main
.......
Scanning dependencies of target testSPHParticleScatter
[ 90%] Building CXX object SmoothParticleHydro/UnitTests/CMakeFiles/testSPHParticleScatter.dir/testSPHParticleScatter.cpp.o
[ 91%] Linking CXX executable testSPHParticleScatter
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
Set up environment
Set up environment
[----------] 1 test from SPHParticleScatterTest
[----------] 1 test from SPHParticleScatterTest
[ RUN      ] SPHParticleScatterTest.scatter
[ RUN      ] SPHParticleScatterTest.scatter
[       OK ] SPHParticleScatterTest.scatter (5 ms)
[----------] 1 test from SPHParticleScatterTest (5 ms total)

[----------] Global test environment tear-down
[       OK ] SPHParticleScatterTest.scatter (6 ms)
[----------] 1 test from SPHParticleScatterTest (6 ms total)

[----------] Global test environment tear-down
Tore down environment
[==========] 1 test from 1 test case ran. (289 ms total)
[  PASSED  ] 1 test.
Tore down environment
[==========] 1 test from 1 test case ran. (289 ms total)
[  PASSED  ] 1 test.
[ 91%] Built target testSPHParticleScatter
[ 95%] Built target gmock
[100%] Built target gmock_main

Remarks

I hope this article has been of use to you. Our series on communication between patches will continue when I get some free time.

If you have questions/comments/corrections, please contact banerjee at parresianz dot com dot zen (without the dot zen).

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